NRI Income Tax & Compliance

Income Tax Notice to Salaried Employees

Hatim Dudhiyawala
Updated on: June 24, 20267 mins Editorial Standards
Income Tax Notice to Salaried Employees

An income tax notice sent to salaried individuals is an official communication that indicates a need for rectification, clarification, or further information regarding potential mistakes, errors, or intentional misrepresentation in your income tax matters. As a salaried individual, you can generally receive notice of deductions, exemptions, and income mismatches.

With respect to the current situation, income has become more significant, particularly for salaried individuals. This is so because the Income Tax Department increasingly uses data analytics, automated risk assessment systems, and information matching tools to identify discrepancies in tax returns, to detect fake deductions, unreported income, non-filing of the ITR, ITR mismatches, ties to high-value transactions, and more. So, as a salaried individual, if you have been sitting on unreported income or claiming deductions without proper documentation, the chance of receiving a notice is much greater than ever, as ITD scrutiny on salaried individuals is getting stricter.

However, do not worry, as this blog will talk about everything you need to know about the salary employees' income tax notice and how to respond to it.

Key Takeaways
  • The common types of income tax notices sent to salaried individuals include intimation notice (Section 143[1]), defective return notice (Section 139(9)), Request for information (Section 142(1)), Scrutiny Notice (Section 143(2)), and income escaping assessment (Section 148).
  • The top reasons for income tax notices to salaried individuals receiving notices include income/TDS notices, unreported side income, inflated deductions, high-value transactions, and non-filing of ITR.
  • NRIs must seek professional assistance for replying to the income tax notice. The professional expert will help you analyze discrepancies in your ITR, reconcile your AIS/Form 26AS, draft precise responses, and avoid potential penalties, if any.

What Is An Income Tax Notice

An income tax notice from the Income Tax Department of India is a formal intimation to the concerned taxpayer seeking action or clarification on discrepancies in their ITR. As a taxpayer, it's important to address such notices promptly to avoid penalties or additional tax liability.

Reasons For Income Tax Notice To Salaried Employees

As a salaried individual, you will receive an income tax notice for various reasons, including:

  • Discrepancies in Income: If the income tax department detects any discrepancies between the income you report and that reported by your employer, For NRIs, discrepancies may also arise from foreign asset disclosures, DTAA claims, overseas income reporting, and information received under FATCA or CRS reporting mechanisms, financial institutions, or other sources, it may issue a notice seeking clarification.
  • Unreported Income: Failure to accurately report all income sources, such as rental income, freelance earnings, or interest income, will result in a notice for underreporting. For example, income from other sources, such as social media or moonlighting. 
  • Incorrect Deductions: If you claim income tax deductions or exemptions that are not supported by proper documentation or do not meet the eligibility criteria, you will receive a notice. You might also receive a notice if the income tax department discovers any fraudulent deductions being claimed. For example, many salaried individuals use fake rent receipts to claim their HRA exemption. Such individuals are on the income tax department radar and receive HRA income tax notices.
  • High Value Transaction: Unusually high-value transactions, such as large cash deposits, property purchases, or investments, will trigger a notice as the taxation authorities aim to ensure the legitimacy of the transactions. 
  • Mismatch in Form 26AS: Form 26AS is a consolidated statement of all tax-related transactions that are associated with your PAN. If there is any mismatch between the income report in your income tax return and the data in Form 26AS, you will likely receive an income tax notice. 
  • Late or No-Filing of Returns: If you fail to file your income tax return by the due date, you may receive a notice requesting an explanation for the delay.
  • Income Tax Scrutiny For Salaried Employees: The department randomly selects some income tax returns for detailed scrutiny to ensure compliance and accuracy. 
  • Foreign Income & Assets: If you have foreign income or assets, or any financial interests that you haven't reported on your income tax form as required by the taxation regulation, you will receive a notice. 
  • Non-Disclosure of Gifts or Loans: If you fail to report the details of loans received, especially if they exceed the threshold, you might come under the radar of the income tax authorities. 
  • Failure to respond to previous notices: Ignoring or inadequately responding to income tax notices can lead to further, more severe notices.
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What Are the Types of Income Tax Notices for Salaried Employees?

The following are the types of income tax notices a salaried employee may receive from the income tax department. 

  • Intimation under section 143(1): This type of income tax notice is issued after the ITR has been filed and processed. This serves as a formal means of communicating the tax calculated by the income tax department to the taxpayer. The notice might be issued if there is any pending tax liability or a refund that needs to be paid. 
  • Notice under section 142(1): This notice is issued under two cases:
  • When you have filed your income tax return, but the income tax officer needs more information or other documents. 
    • If you have not filed the ITR, and the income tax officer wants you to file it. 
    • If you fail to respond to a notice under 142(1), you will incur a penalty of up to Rs 10,000 and imprisonment of up to 1 year. 
  • Notice under section 148: An income tax notice under this section is issued if the income tax officer has proof or has reason to believe that you have not disclosed your total income correctly or paid your taxes properly. A notice under section 148 is known as an income escaping notice. 
  • Notice under section 139(9): If there are any errors or discrepancies in the tax return, or if the tax return has failed, the tax department will issue this notice to give you an opportunity to rectify the flagged errors. This notice is also known as a defective return notice. If you receive this notice, you must rectify the defect and submit the corrected return details through the e-filing portal within the prescribed timeline. that addresses the issues and reference the notice within 15 days of receiving it. 
  • Notice Under Section 143(2): The notice is issued to notify the taxpayer that his/her return has been picked for scrutiny under a detailed assessment. The overall purpose of this entity is to ensure that you have not underreported your income, paid less taxes, or claimed excessive losses. 
  • Notice under section 156 (Demand Notice): As a salaried individual, you will receive a notice under section 156 if any amount of fees, tax liability, penalty, or fine is due to be paid by you, as the taxpayer, to the income tax department. As a taxpayer, you are required to pay the required amount within 30 days of receiving the notice. 
  • Notice under section 245: If the Income Tax Department of India believes the taxes for the previous year have not been paid and wants to set off that demand against the current year's refund, you might be served with a notice under section 245. You must respond to this notice within 30 days of receiving it.

How To Respond To The Income Tax Notice For Salaried Individuals

As a salaried individual, responding to an income tax notice effectively requires careful attention on your part and the strict adherence to the provisions outlined by the tax authorities. Here's how you can respond to the notice effectively. 

Step 1: Log in to incometax.gov.in

Go to the pending action, then e-proceedings. Find the income tax notice and verify it using DIN or the PAN-based authentication tools on the portal. Ensure that you never respond to an email received only by email without first confirming it appears in your portal account. 

Step 2: Read the Notice Thoroughly:

Read the income tax notice carefully, understand why the notice was issued, what it flagged, and the required actions you must take. 

Step 3: Get the Supporting Documents

Collect all relevant supporting documents, including your income tax return, Form 16, Form 26AS, proof of investment, bank statements, and any other documentation related to the issues raised in the notice. 

You will basically need

  • Form 16 Part A and Part B
  • Form 26AS and AIS for the relevant year. 
  • Bank statements for showing the interest income. 
  • Investment proofs for the deductions claimed.
  • Capital gains statements from mutual funds, brokers, or other investment platforms. 
  • Salary slips if there is an income discrepancy. 

Step 4: Draft Your Response: 

Keep the response professional, on point, and as factual as possible. Address only what the notice asks about, neither more nor less. Upload all the supporting documents as PDFs through the e-proceedings section. 

Step 5: Submit The Return Before The Deadline.

Timely Response is crucial. Please note that the deadline for responding to an income tax notice is mentioned in the notice itself, hencefoth ensure that you respond to the notice within the mentioned time frame to avoid any complications. 

A few tips to follow when responding to an income tax notice: 

  • Organize Documents: Organize the documents in a legally compliant manner and facilitate verification. 
  • Seek Professional Assistance: It is always advisable to seek professional assistance, and notices can be compiled and challenging to respond to; henceforth, a professional chartered accountant will guide us throughout. These experts can help you through their guidance based on their expertise and experience. 
  • Track the Response: Use the online method to track submissions and any acknowledgments for responses received. 
  • Regularly Check For Updates: Please monitor your communication channels regularly for any updates or notices so you can respond in a timely manner. 

Special Consideration For NRI Salaried Individuals Receiving Tax Notices In India

NRIs who were originally salaried employees before moving overseas, or who still receive Indian salary income, will face an additional layer of complexity when dealing with income tax notices. 

Residential Status Is The First Thing To Verify

As an NRI, your tax liability as a salaried individual will depend entirely on your Residential Status, which is whether you are a resident, NRI, or RNOR during the relevant financial year. If your resident status has changed during the year, for instance, you left India mid-year, the relevant tax rate for your salary income will change accordingly. An income tax notice that questions your income will actually be a residential tax dispute in disguise. 

Multiple Income Sources Across Countries

NRIs with Indian income alongside their foreign salary, overseas interest, or capital gains for the Indian investments often end up underreporting their Indian income or incorrectly applying DTAA exemptions. The Income Tax Department AIS captures Indian source income comprehensively; any mismatch will trigger a notice. 

Form 16 From Indian Employers

NRIs employed by Indian companies or deputed from foreign companies to India receive Form 16 like any other resident employee. However, their TDS may have been calculated incorrectly if their NRI status was not properly communicated to the employee. This certainly creates a mismatch that often surfaces during ITR processing. 

An NRI example: Aman worked for an IT company in Bengaluru until October 2024, then he relocated to Singapore for a new role. For FY 2024-25, he received Form 16 from his Indian employer covering the period from April to October. His new employer in Singapore paid him from November onwards. 

He filed his Indian ITR as an NRI, covering only the Indian salary. He received a Section 143(1) intimation notice, showing a demand of Rs 28,000.

The mistake was that his Indian employer had deducted the TDS based on the projected full-year salary, without adjustments for his mid-year departure. The TDS credit in Form 26AS matched, but the income in his ITR was accurate; the receipts were only for the April to October salary, and did not match what the employer had reported. 

Aman filed the rectification under section 154 with his Form 16, payslips for all relevant months, and a note clarifying his change in residential status and departure date. The demand was then revised to nil within the six weeks. 

The following are the key NRI tips:

They always carry passport copies with entry/exit stamps when responding to notices; proof of residential status is often required. 

Keep your e-filing portal mobile updated; NRIs with inactive Indian numbers miss OTPs and notice alerts. 

If your Indian employer did not account for your mid-year change in resident status, a rectification application under Section 154 of the Income Tax Act is the correct route.

How To Avoid Income Tax Notices as a Salaried Employee

If you get a knack of the following key tips as a salaried individual, you can avoid an Income Tax Notice seamlessly. 

  • Reconcile Form 16 with Form 26AS and AIS before filing: Before you submit your ITR, review every figure in your Form 16 against the records in Form 26AS and your AIS. If you suspect a mismatch in the TDS amount, salary figures, or the income, it should be resolved either by requesting a corrected Form 16 from your employers or by flagging the discrepancy in your ITR with a note. 
  • Declare all income sources, not just salary: Log in to your Annual Information Statement at incometax.gov.in and check every transaction the department has on record. Saving account interest, FD interest, mutual fund dividends, and any other income the department can see must be mentioned in your ITR, even if the TDS was already deducted on it. 
  • Inform your employer of the investment declaration on time: your employer calculates TDS based on the declaration you submit. A late or incomplete declaration will lead to incorrect TDS, either too much or too little. You shall submit all of your proof to your payroll team on time every year.
  • If you change jobs, share your previous employer's Form 16: You shall hand over your Form 16 or the salary details from your old employer to your new employer so they can factor in your total annual income when calculating TDS for the remaining months. Without this, you may under-deduct, which will eventually lead to a shortfall and a potential demand notice. t
  • File Your ITR Before the Applicable Due Date: Filing your return after the applicable due date may attract late filing fees under Section 234F, interest on outstanding taxes where applicable, and increased scrutiny in certain situations. 
  • For NRIs, update your residential status accurately: If your residential status has changed during the year, calculate it carefully based on the actual days in India. An incorrect status, even by mistake, is one of the most common notices that trigger NRIs to return or depart. 
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The Bottom Line

For salaried employees, income tax notices are way more common than we think. These notices are easily manageable and, in most cases, preventable. The three most frequent causes of errors and income tax notices are TDS mismatches, undeclared income, and incorrect deduction claims, all of which can be addressed with a little preparation. 

However, there is one golden rule: always reconcile your Form 16 with your AIS before filing. What your employer reports and what the department sees must match what you are declaring. When they do not match, a notice will be served. 

For NRIs earning an Indian salary, there is an additional layer to the residential status accuracy, which makes the reconciliation even more important. A mid-year departure, a change in tax treaty applicability, or an employer who did not add TDS for your non-resident status can all create discrepancies that generate the notice months later. 

If you, as an NRI, have received an income tax notice and are unsure how to respond, Savetaxs is here to help. Our team of experts will help you with notice reconciliation, that is, reviewing and matching your financial data, such as bank statements, AIS, 26AS, and more, with the details mentioned in your income tax notices. 

We further help you with data entry and processing, accurately inputting tax data, drafting and submitting responses, and providing end-to-end support in resolving general queries regarding tax computations, deductions, and refund status. 

Connect with us as we serve our clients 24/7 across all time zones.

Note: This guide is for information purposes only. The views expressed in this guide are personal and do not constitute the views of Savetaxs. Savetaxs or the author will not be responsible for any direct or indirect loss incurred by the reader for taking any decision based on the information or the contents. It is advisable to consult either a CA, CS, CPA or a professional tax expert from the Savetaxs team, as they are familiar with the current regulations and help you make accurate decisions and maintain accuracy throughout the whole process.

About Author
Hatim Dudhiyawala
Hatim Dudhiyawala Certified Public Accountant (CPA)

Hatim Dudhiyawala is a Certified Public Accountant (CPA) with SaveTaxs and specializes in Indian and NRI taxation. He advises individuals, NRIs, and businesses on income tax filing, capital gains taxation, DTAA benefits, fund repatriation, and tax compliance. With experience in cross-border tax matters, Hatim helps taxpayers understand complex regulations and make informed decisions. Through his articles, he shares practical insights to help readers stay compliant and manage their tax obligations with confidence.

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Frequently Asked Questions

If a salaried individual has received an income tax notice for non-filing of the ITR, they can file a belated return and respond to the notice professionally by providing an explanation for the non-filing. However, if the notice has been received for different reasons, they must respond within the specified time frame and provide the needful.

As an NRI, if you fail to respond to the income tax notice within the specified time frame, the Income Tax Department may impose a minimum penalty of 1% of the tax liability per month and a maximum penalty of 100% of the income tax amount.

Yes, income tax returns can be rejected in a few specific situations, such as late submission of the ITR, absence of a signature, low-quality ITR, and more.

If the taxpayer's ITR is selected for detailed scrutiny by the Income Tax Department, the department must issue a notice within the prescribed period from the end of the relevant financial year, that is, the year in which the return was filed.

The following are the ways to check your income tax notice online: Step 1: Go to your dashboard and open the official e-filing portal. Step 2: Log in or register using your PAN, Aadhaar, or the User ID. Step 3: Check the "View Filed Returns" section to see if any notices have been issued for your income tax returns. Step 4: You must also view all the received notices in the "Worklist" section.