NRI Income Tax & Compliance

How to Appeal a Refund Denial?

Hatim Dudhiyawala
Updated on: July 17, 202613 mins Editorial Standards
How to Appeal a Refund Denial

After filing the ITR, you were waiting to get a refund, but instead you received a notification. The notification was about your refund being denied, adjusted, or put on hold. Such a situation can be frustrating, especially for NRIs who are managing their Indian tax obligations from abroad. Also, in many cases, taxpayers may assume that the refund denial is final, but that is not true. 

The Income Tax Department allows taxpayers to disagree with an incorrect refund denial via several online mechanisms. It includes filing a rectification request, responding to a Section 245 notice, raising a grievance, or filing an appeal. The correct appeal route depends on the reason for the denial. 

The main step is to find out the reason why your refund was rejected and then choose the correct course of action within the specified timeline. Keep reading further to know the common reasons behind refund denials, various mechanisms available under the Income Tax Act, and much more.

Key Takeaways
  • NRIs can disagree with a refund denial by filing a rectification request, responding to a Section 245 notice, raising an e-Nivaran grievance, or filing an appeal before CIT(A), based on the reason.
  • The common reasons for a refund denial include TDS mismatches, outstanding tax demand, scrutiny proceedings, invalid bank account details, pending ITRs, or DTAA-related processing errors.
  • Using the wrong mechanisms can delay your refund, so match the issue with the relevant remedy under the Income Tax Act.
  • Missing deadlines, mainly the 30-day response period for a Section 245 notice, can result in an automatic refund adjustment and a longer recovery process.
  • Keep your email, mobile number, and bank details updated to recieve important notices on time and avoid unnecessary delays in refunds.

Why Was Your Tax Refund Denied?

Before you proceed with the appeal, you must understand why your refund was denied. There can be various reasons behind the Income Tax Department denying or withholding your refund:

  • TDS Mismatch: The department may reduce or deny the refund during processing under Section 143(1)(a) if the TDS amount claimed in your return does not match the details in Form 26AS or the Annual Information Statement (AIS).
  • Additional Verification or Return Under Scrutiny: The refund will be held if your return has been chosen for scrutiny under Section 143(2) untill the verification is completed. 
  • Pending Prior-Year Compliance: Pending income tax returns do not automatically lead to refund denial. However, depending on the facts of the case and the applicable provisions of the Income-tax Act, pending compliance or related proceedings may affect refund processing or delay its release.
  • Wrong or Invalid Bank Account: The refund will fail if it was processed but the provided bank account details are incorrect. This will reflect as a denial or "Refund Failed" status. It means the payment failed, not your application. However, the solution is the same, which is to update the bank account details and request a reissuance. 
  • Outstanding Tax Demand from a Prior Year: This is one of the common reasons. The department can adjust your current refund against any unpaid demand from a prior assessment year under Section 245. In this situation, you might have received a prior intimation, so under 'e-proceedings ', check your portal inbox. 
  • DTAA or Foreign Income Processing Errors: For NRIs who claim DTAA benefits or foreign tax credits, the credit may be disallowed, and the refund may be denied or reduced due to manual processing errors or missing documentation.

Now that we have mentioned NRIs, the question arises whether NRIs are allowed to appeal a refund denial. Let's discuss that.

Can NRIs Appeal a Refund Denial?

Yes, NRIs have the same rights as resident taxpayers to appeal a refund denial. Also, all the appeal mechanisms are available online through the income tax portal. They can appeal a refund denial through the income tax e-filing portal by :

  • Filing a rectification request under Section 154,
  • Responding to a Section 245 notice,
  • Raising a grievance through e-Nivaran, or
  • Filing an appeal before the Commissioner of Income Tax

The process for an income tax refund denied for an NRI depends on the reason for the refund denial. Let's see how you can match the issue to the right response.

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How to Appeal a Refund Denial?

Now that we have the answer to your question Why was my income tax refund denied. Let's move forward with the steps below to appeal a refund denial:

Step 1:Identify the Specific Reason for Denial

Log in to the income tax portal and check:

  • For any Section 245 intimation or scrutiny notice under pending actions 'e-proceedings'.
  • For processing status and any demand raised under 'View Filed Returns'.
  • Check what income and TDS data are used by the department by viewing your AIS under 'Annual Information Statement'. 

The reason for denial can always be checked in any of these three places. 

Step 2: Select the Correct Route for Appeal

The correct route for appeal depends on the reason for denial, such as:

Reason for Denial Correct Action
TDS mismatch or arithmetic error in processing File rectification under Section 154
Refund adjusted against old demand under Section 245 Respond to the Section 245 notice, whether you agree or disagree
Income tax refund withheld as return is under scrutiny Respond to 143(2) notice with documents or apply for a refund release pending assessment
Failing to file for prior years File pending returns and raise a grievance
DTAA credit disallowed File rectification under Section 154 with supporting documents
General processing issue or no response from the department Raise a grievance under e-Nivaran
Demand raised incorrectly after assessment File an appeal before CIT(A) under Section 246A.

Step 3: File a Rectification Request Under Section 154 (For Processing Errors)

This is one of the most commonly used routes for NRIs whose refunds were denied or lessened due to TDS mismatch, data entry error, or wrong disallowance. Here is how you can file a rectification request:

  • Go to 'e-file' → Income Tax Return → 'Rectification Request'
  • Choose the assessment year
  • Select the rectification type: 'reprocess the return' for most standard errors, or 'tax credit mismatch' for TDS issues
  • Upload the supporting documents: Form 26AS, AIS, TDS certificates, DTAA documents (if applicable)
  • Submit and note the acknowledgement number.

Your rectification will typically be processed within 30-90 days by the department. You can track the status under the same section.

Step 4: Respond to a Section 245 Notice (For Refund Adjustments Against Demand)

If your refund was adjusted against an outstanding demand, follow the steps below:

  • Go to 'Pending Actions' → 'Response to Outstanding Demand'
  • Choose the relevant demand and select whether you 'agree' or ' disagree'
  • If you disagree, you must provide a detailed explanation and attach supporting documents to show why the demand is wrong. The documents can include proof of payment, rectification reference, TDS certificates, etc.
  • Submit it within the deadline mentioned in the notice, which is typically 30 days.

In case the old demand in itself is wrong (like already paid, raised in error, or under appeal), you must mention this clearly in your response along with proof. 

Step 5: Raise a Grievance Under e-Nivaran (For Unresolved or Unexplained Denials)

In case your refund has been denied or withheld without a clear reason or if prior steps have not provided a solution, follow the steps below:

  • Go to the 'Grievance' section on the portal
  • Choose the category that is most relevant to your issue: ITR processing, refund, or outstanding demand.
  • Specify the issue clearly by including the assessment year, refund amount, and any prior actions taken
  • Submit and track the response

Grievances are usually acknowledged within 48 hours and resolved within 30-60 days. However, this time frame may vary for complex cases. 

Step 6: File an Appeal Before CIT(A) Under Section 246A (For Incorrect Demand Orders)

You have the right to appeal to the Commissioner of Income Tax (Appeals) within 30 days of receiving the order. This applies if the refund denial arises from an assessment order that you think is either factually or legally incorrect. 

This process is more formal, and the appeal must include grounds of appeal, the impugned order, and even a fee payment. NRIs who have significant refund amounts or DTAA disputes, this route is often the most effective for the long term. Let's understand this with the help of an example.

NRI Example

Arjun is an Indian citizen who lives in Germany. He filed his Indian ITR as an NRI for AY 2024-25 and claimed a refund of ₹82,000. This return mainly arose from TDS deducted at 30% on interest from his NRO fixed deposit, while he owed tax at a lower effective rate.

Three months after filing, he checked his refund status only to find it marked as 'Refund Adjusted' with the entire ₹82,000 set off against a demand from the assessment year 2021-22, which he was not aware of. 

Upon logging into the portal, he discovered a Section 245 intimation in his e-Proceedings inbox, which he had missed since his portal email was linked to an account he seldom accessed. Upon reviewing the demand for AY 2021-22, which amounted to ₹74,000 and was due to a TDS mismatch, Arjun verified that the TDS was indeed reflected correctly in his Form 26AS for that year. It seemed the demand had been based on an incorrect processing.

To address this, Arjun filed a rectification request under Section 154 for AY 2021-22, uploading his Form 26AS and the Annual Information Statement (AIS) that confirmed the TDS credits. At the same time, he responded to the Section 245 notice for AY 2024-25, indicating 'Disagree' and clarifying that the underlying demand was due to a processing error that was in the process of being rectified.

Within 55 days, the rectification for AY 2021-22 was finalized, nullifying the demand, and the ₹82,000 refund for AY 2024-25 was credited to his updated NRO account. Remarkably, he managed the entire process online from Germany without needing to be physically present or send any documents via courier. However, it required him to act quickly, keep his portal email active, and understand the appropriate appeal processes for each situation.

That's all about the Income Tax Refund appeal process. At last, we will understand the common mistakes that NRIs should avoid while appealing a request for a refund denial.

Common Mistakes NRIs Should Avoid

Here are some of the common mistakes that NRIs must avoid while appealing a refund denial:

  • Not Regularly Checking the Portal Inbox: Section 245 notices and other notices are sent digitally. NRIs who don't check their portal inbox, especially the e-proceedings sections, risk missing critical deadlines and unintentionally forfeiting refunds.
  • Responding Incorrectly: Filing a grievance instead of addressing a rectification matter or ignoring a Section 245 notice can significantly delay resolution. It’s important to match your issue with the correct response method.
  • Overlooking the response deadline for Section 245: If you do not reply to a Section 245 notice within 30 days, the adjustment will proceed automatically. This means your refund will be applied to any outstanding demand, and recovering it would require restarting the rectification process.
  • Neglecting to update contact information on the portal: NRIs who have changed their email or mobile number since signing up for the e-filing portal will miss automated notifications. It’s crucial to update your contact details in the 'My Profile' section using an email you check regularly.
  • Assuming the department's demand is always accurate: Automated processing can lead to errors. Issues like TDS mismatches, data entry mistakes, and incorrect processing of DTAA claims can result in unwarranted demands. Always verify the basis of any demand before making a payment.
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The Bottom Line

A denied tax refund is not a permanent rejection, as the Income Tax Department provides clear appeal mechanisms for processing errors, TDS mismatch, adjustment against an old demand, or DTAA dispute. The good thing is that all of these are accessible online. The key to getting your money back is choosing the correct legal route and acting before the deadline. Using the wrong method will only cause delays.

For NRIs, keeping the portal contact details updated is important. This is because most permanently lost refunds happened mainly due to missing a time-sensitive notice and not because the claim itself was wrong. 

Moreover, if you are also facing this issue or have any doubts, contact an expert at Savetaxs. We have an entire team of experts actively working 24/7 across all time zones. Contact us right away.

Note: This guide is for information purposes only. The views expressed in this guide are personal and do not constitute the views of Savetaxs. Savetaxs or the author will not be responsible for any direct or indirect loss incurred by the reader for taking any decision based on the information or the contents. It is advisable to consult either a CA, CS, CPA or a professional tax expert from the Savetaxs team, as they are familiar with the current regulations and help you make accurate decisions and maintain accuracy throughout the whole process.

About Author
Hatim Dudhiyawala
Hatim Dudhiyawala Certified Public Accountant (CPA)

Hatim Dudhiyawala is a Certified Public Accountant (CPA) with SaveTaxs and specializes in Indian and NRI taxation. He advises individuals, NRIs, and businesses on income tax filing, capital gains taxation, DTAA benefits, fund repatriation, and tax compliance. With experience in cross-border tax matters, Hatim helps taxpayers understand complex regulations and make informed decisions. Through his articles, he shares practical insights to help readers stay compliant and manage their tax obligations with confidence. See Full Bio

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Frequently Asked Questions

The common reasons for income tax refund denials include outstanding tax demands from prior years (adjusted under Section 245), TDS mismatches between your ITR and Form 26AS or AIS, returns selected for scrutiny under Section 143(2), incorrect or unvalidated bank account details, pending returns from prior years, or the disallowance of DTAA benefits or foreign tax credits for NRIs.

Yes, NRIs can appeal a refund denial from outside India. All appeal mechanisms can be completed entirely online through the Income Tax e-filing portal, including rectification under Section 154, responses to a Section 245 notice, grievances under e-Nivaran, and appeals before CIT(A) under Section 246A. This means there is no need to visit India in person.

A Section 245 notice is an intimation from the Income Tax Department informing you that your current year's refund is proposed to be adjusted against an outstanding demand from a previous assessment year. You need to respond within 30 days, either agreeing or disagreeing with the adjustment. The adjustment will proceed automatically if you don't respond, and the refund will be offset against the old demand.

You can file a rectification request by logging in to the Income Tax e-filing portal. Then, go to e-File → Income Tax Return → Rectification Request. Choose the relevant assessment year and the type of rectification (such as reprocessing the return or correcting a tax credit mismatch), upload supporting documents like Form 26AS and TDS certificates, and submit the request. The rectification is usually processed within 30 to 90 days by the department.

A rectification under Section 154 is used to correct a mistake that is apparent from the record, such as a TDS mismatch or an arithmetic error in processing. On the other hand, an appeal before CIT(A) under Section 246A is a formal legal challenge to an assessment order. This is required when you believe the department's decision is incorrect, either factually or legally. Appeals are ideal for larger disputes or when rectification does not resolve the issue.